| | NPHP3, NPHP3-ACAD11 +1 more | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis +3 more | GConflicting classifications of pathogenicity |
| | NPHP3-AS1, NPHP3 +1 more (S111F) | Single nucleotide variant (non-coding transcript variant +1 more) | NPHP3-related Meckel-like syndrome +3 more | |
| | LOC129937586, NPHP3 +2 more (A87G) | Single nucleotide variant (missense variant +1 more) | Renal-hepatic-pancreatic dysplasia 1 +2 more | |
| | LOC129937586, NPHP3 +2 more (G78V) | Single nucleotide variant (non-coding transcript variant +1 more) | not provided +6 more | |
| | LOC129937586, NPHP3 +2 more | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis +4 more | GConflicting classifications of pathogenicity |
| | LOC129937586, NPHP3 +2 more | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis +5 more | GConflicting classifications of pathogenicity |
| | LOC129937586, NPHP3 +2 more (A52T) | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis 3 +6 more | GConflicting classifications of pathogenicity |
| | NPHP3-ACAD11, NPHP3-AS1 +2 more | Single nucleotide variant (non-coding transcript variant +1 more) | Kidney disorder +6 more | GConflicting classifications of pathogenicity |
| | NPHP3-ACAD11, NPHP3-AS1 +2 more | Single nucleotide variant (non-coding transcript variant +1 more) | Kidney disorder +5 more | |
| | NPHP3, NPHP3-ACAD11 +2 more | Single nucleotide variant (non-coding transcript variant) | Renal-hepatic-pancreatic dysplasia 1 +4 more | |
| | LOC129937587, NPHP3 +2 more | Single nucleotide variant (non-coding transcript variant) | Renal-hepatic-pancreatic dysplasia 1 +2 more | |